User contributions
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)
- 10:52, 25 February 2015 (diff | hist) . . (+38) . . Photo (→2014 Workshop) (current)
- 10:49, 25 February 2015 (diff | hist) . . (0) . . N File:XenBioinfo 2014b.jpg (current)
- 10:47, 25 February 2015 (diff | hist) . . (+139) . . Photo (→2014 Workshop)
- 10:45, 25 February 2015 (diff | hist) . . (+6) . . Photo (→2014 Workshop)
- 10:44, 25 February 2015 (diff | hist) . . (+49) . . N Photo (Created page with "== 2014 Workshop == Image:XenBioinfo_2014.jpg")
- 10:44, 25 February 2015 (diff | hist) . . (+15) . . MediaWiki:Sidebar (current)
- 10:43, 25 February 2015 (diff | hist) . . (+31) . . Main Page (current)
- 10:42, 25 February 2015 (diff | hist) . . (0) . . N File:XenBioinfo 2014.jpg (current)
- 13:26, 12 January 2015 (diff | hist) . . (+232) . . RSEM (current)
- 13:10, 12 January 2015 (diff | hist) . . (+298) . . RSEM
- 18:15, 11 January 2015 (diff | hist) . . (+133) . . N RSEM (Created page with "== Prepare reference sequences == $ rsem-prepare-reference my_fasta.fa my_fasta.rsem == Convert SAM file == ---- Category:HowTo")
- 11:06, 2 December 2014 (diff | hist) . . (+1,310) . . N GeneIdentifier (Created page with "= JGI annotation for ''Xenopus laevis'' = == From XenBase FTP == * Xenla6.0 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla6.0/) XeXenL6RMv10+numeric_id+'m' (e.g. XeXenL6RMv10...") (current)
- 14:39, 17 November 2014 (diff | hist) . . (+233) . . STAR (current)
- 16:17, 22 October 2014 (diff | hist) . . (+430) . . BWA (current)
- 13:33, 22 October 2014 (diff | hist) . . (+126) . . STAR (→Build a database)
- 00:22, 22 October 2014 (diff | hist) . . (+18) . . STAR (→Build a database)
- 00:21, 22 October 2014 (diff | hist) . . (+378) . . N STAR (Created page with "== Build a database == $ /path/to/star/STAR --runMode genomeGenerate --genomeDir <dir_name> \ --genomeFastaFiles <fasta_file> --runThread<N> == See also == * Project home ...")
- 15:08, 21 October 2014 (diff | hist) . . (+188) . . N GMAP (Created page with "== Build a database == $ /path/to/gmap/bin/gmap_buid -D dest_dir_name -d db_name seq.fasta == See also == * Project homepage - http://research-pub.gene.com/gmap/ ---- Cat...") (current)
- 15:04, 21 October 2014 (diff | hist) . . (+92) . . N BWA (Created page with " == See also == * Project website - http://bio-bwa.sourceforge.net/ ---- Category:HowTo")
- 10:28, 21 October 2014 (diff | hist) . . (+4) . . Bowtie1 (→Run it!) (current)
- 10:27, 21 October 2014 (diff | hist) . . (+1,845) . . N Bowtie1 (Created page with "== Installation == * Download pre-compiled program from the website below. ** Version 1.1.1 is available at http://sourceforge.net/projects/bowtie-bio/files/bowtie/1.1.1/ * Un...")
- 13:26, 17 May 2014 (diff | hist) . . (-61) . . List of sessions (→Day 7 - 5/17/2014) (current)
- 13:02, 17 May 2014 (diff | hist) . . (+179) . . BLAST+ HowTo (→Download & install the program) (current)
- 11:34, 17 May 2014 (diff | hist) . . (+48) . . List of sessions (→Day 7 - 5/17/2014)
- 11:32, 17 May 2014 (diff | hist) . . (+94) . . List of sessions (→Day 7 - 5/17/2014)
- 11:01, 17 May 2014 (diff | hist) . . (+25) . . N Functional Network (Created page with "http://www.cytoscape.org/") (current)
- 10:31, 17 May 2014 (diff | hist) . . (+10) . . Microarray (current)
- 10:30, 17 May 2014 (diff | hist) . . (+3,304) . . N Microarray (Created page with "* http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12613 = exp.txt = <pre> Filename Sample Group Description CEL/GSM315919.CEL ICD1 ICD ICD-1 CEL/G...")
- 06:13, 17 May 2014 (diff | hist) . . (0) . . List of sessions (→Day 7 - 5/17/2014)
- 06:13, 17 May 2014 (diff | hist) . . (+319) . . N Orthology (Created page with "= Databases = * InParanoid - http://inparanoid.sbc.su.se/cgi-bin/index.cgi * OrthoMCL - http://orthomcl.org/orthomcl/ * TreeFam - http://www.treefam.org/ (only animal) * EggN...") (current)
- 06:07, 17 May 2014 (diff | hist) . . (+339) . . N HowTo MeV (Created page with "[http://www.tm4.org/mev.html MeV]('MultiExperiment Viewer') is a viewer in TM4 package (microarray software suite). Although it is designed for microarray, all analysis functi...") (current)
- 05:57, 17 May 2014 (diff | hist) . . (+105) . . List of sessions (→Day 7 - 5/17/2014)
- 00:52, 17 May 2014 (diff | hist) . . (-2) . . List of sessions (→Day 6 - 5/16/2014)
- 00:51, 17 May 2014 (diff | hist) . . (0) . . m SNP analysis (TaejoonKwon moved page SNP and Galaxy to SNP analysis: Moved galaxy to other session) (current)
- 00:51, 17 May 2014 (diff | hist) . . (+26) . . N SNP and Galaxy (TaejoonKwon moved page SNP and Galaxy to SNP analysis: Moved galaxy to other session) (current)
- 14:49, 16 May 2014 (diff | hist) . . (+73) . . List of sessions (→Day 6 - 5/16/2014)
- 14:34, 16 May 2014 (diff | hist) . . (+292) . . List of sessions (→Day 6 - 5/16/2014)
- 14:33, 16 May 2014 (diff | hist) . . (-44) . . List of sessions (→Day 6 - 5/16/2014)
- 14:31, 16 May 2014 (diff | hist) . . (+117) . . List of sessions (→Day 5 - 5/15/2014)
- 14:28, 16 May 2014 (diff | hist) . . (+14) . . ChIPseq motif (current)
- 14:27, 16 May 2014 (diff | hist) . . (+238) . . ChIPseq motif
- 14:24, 16 May 2014 (diff | hist) . . (+196) . . ChIPseq motif
- 14:23, 16 May 2014 (diff | hist) . . (+10,558) . . N ChIPseq motif (Created page with "You took fastq reads from an H3K4me3 experiment, made a genomic bowtie2 index from a fasta file, aligned the reads, converted the aligned sam files to bam files, sorted them, ...")
- 14:19, 16 May 2014 (diff | hist) . . (+26) . . List of sessions (→Day 6 - 5/16/2014)
- 08:29, 16 May 2014 (diff | hist) . . (+137) . . List of sessions (→References)
- 18:58, 15 May 2014 (diff | hist) . . (-16) . . SNP analysis (→How to find SNPs)
- 18:56, 15 May 2014 (diff | hist) . . (+3,147) . . N SNP analysis (Created page with "= How to find SNPs = mpileup file: <pre> TranscriptID position base@position actual_reads_and_qual E2F4|ENSG00000205250|c.XGI_TC419474|JGIv7b.000015416_1879975-19...")
- 18:50, 15 May 2014 (diff | hist) . . (+32) . . List of sessions (→Day 6 - 5/16/2014)
- 18:50, 15 May 2014 (diff | hist) . . (-6) . . List of sessions (→Day 5 - 5/15/2014)
- 18:49, 15 May 2014 (diff | hist) . . (-14) . . Main Page (→Course)
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)