BWA
From XenopusBioinfo
Building a database
$ /path/to/bwa index <my fasta file>
Mapping
$ /path/to/bwa mem <db name> <fastq file> > <sam file>
See also
- Project website - http://bio-bwa.sourceforge.net/
- Manual - http://bio-bwa.sourceforge.net/bwa.shtml
- References
- bwa-backtrack http://bioinformatics.oxfordjournals.org/content/25/14/1754
- bwa-sw http://bioinformatics.oxfordjournals.org/content/26/5/589
- fastmap (SNP calling) http://bioinformatics.oxfordjournals.org/content/28/14/1838