Difference between revisions of "STAR"
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$ /path/to/star/STAR --runMode genomeGenerate --genomeDir <dir_name> \ | $ /path/to/star/STAR --runMode genomeGenerate --genomeDir <dir_name> \ | ||
--genomeFastaFiles <fasta_file> --runThreadN <number of threads> | --genomeFastaFiles <fasta_file> --runThreadN <number of threads> | ||
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| + | For transcript database, use '--genomeChrBinNbits 10 --genomeSAindexNbases 10' additionally (see section 2.2 in the manual). | ||
== See also == | == See also == | ||
Revision as of 13:33, 22 October 2014
Build a database
$ /path/to/star/STAR --runMode genomeGenerate --genomeDir <dir_name> \ --genomeFastaFiles <fasta_file> --runThreadN <number of threads>
For transcript database, use '--genomeChrBinNbits 10 --genomeSAindexNbases 10' additionally (see section 2.2 in the manual).
See also
- Project home - https://github.com/alexdobin/STAR
- Paper - http://bioinformatics.oxfordjournals.org/content/29/1/15
- Manual - https://github.com/alexdobin/STAR/blob/master/doc/STARmanual.pdf
