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This wiki is for ''Xenopus'' Bioinformatics Workshop 2014 at the [http://www.mbl.edu Marine Biological Laboratory (MBL)] (May 11-18, 2014), hosted by [http://www.mbl.edu/xenopus/ National ''Xenopus'' Resrouce (NXR)] | This wiki is for ''Xenopus'' Bioinformatics Workshop 2014 at the [http://www.mbl.edu Marine Biological Laboratory (MBL)] (May 11-18, 2014), hosted by [http://www.mbl.edu/xenopus/ National ''Xenopus'' Resrouce (NXR)] | ||
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| + | * [http://www.mbl.edu/xenopus/files/2012/07/XenBioinfo2014_course_outline.pdf Workshop Outline & Rationale] | ||
| + | * [http://www.mbl.edu/xenopus/files/2012/07/XenBioinfo2014_Syllabus.feb24.pdf Syllabus] | ||
= Instructors = | = Instructors = | ||
Revision as of 11:44, 17 April 2014
Wellcome to Xenopus Bioinformatics Workshop 2014!
This wiki is for Xenopus Bioinformatics Workshop 2014 at the Marine Biological Laboratory (MBL) (May 11-18, 2014), hosted by National Xenopus Resrouce (NXR)
Contents
Instructors
- Leonid Peshkin, Harvard University
- Taejoon Kwon, Univerity of Texas at Austin
- Virginia Savova, Harvard University
- Ian Quigley, Salk Institute
- Martin Wuehr, Harvard University (guest instructor)
Alumni
- Bob Freeman, Harvard University
- Mike Gilchrist, NIMR, UK
Course
Mainly we will use in-house workstation for most of sessions. Just in case, when you need high-performance computing (e.g. your own sequencing data), you can use guest account of the Orchestra clusters at Harvard Medical School. Check LSF_HowTo to learn how to use it.
- List_of_sessions
- List_of_participants_2014
- Dataset
- https://github.com/taejoon/XenBioinfo2014 (Our primary github repository. See Github_HowTo to learn how to use it.)
Resources
- List_of_programs - programs used during the workshop
- List_of_papers
- http://software-carpentry.org/v5/book.html ('Software Carpentry' Book, edited by Greg Wilson. Don't worry, we will not cover all of them, although we are happy to discuss about it.)
- https://github.com/stephenturner/oneliners ('Useful bash one-liners for bioinformatics')
