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'''Wellcome to Xenopus Bioinformatics Workshop 2014!''' | '''Wellcome to Xenopus Bioinformatics Workshop 2014!''' | ||
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| + | [[Image:XenBioinfo_2014.jpg]] | ||
This wiki is for ''Xenopus'' Bioinformatics Workshop 2014 at the [http://www.mbl.edu Marine Biological Laboratory (MBL)] (May 11-18, 2014), hosted by [http://www.mbl.edu/xenopus/ National ''Xenopus'' Resrouce (NXR)] | This wiki is for ''Xenopus'' Bioinformatics Workshop 2014 at the [http://www.mbl.edu Marine Biological Laboratory (MBL)] (May 11-18, 2014), hosted by [http://www.mbl.edu/xenopus/ National ''Xenopus'' Resrouce (NXR)] | ||
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* Virginia Savova, Harvard University | * Virginia Savova, Harvard University | ||
* Ian Quigley, Salk Institute | * Ian Quigley, Salk Institute | ||
| − | * Martin | + | * Martin Wühr, Harvard University (guest instructor) |
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| − | + | ||
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| + | = Meals = | ||
| + | * Breakfast: 7am - 8:30am | ||
| + | * Lunch: 12pm - 1:30pm | ||
| + | * Dinner: 5pm - 7pm | ||
= Course = | = Course = | ||
| + | Mainly we will use in-house workstation for most of sessions. Just in case, when you need high-performance computing (e.g. your own sequencing data), you can use guest account of the [https://wiki.med.harvard.edu/Orchestra/WebHome Orchestra] clusters at Harvard Medical School. Check [[LSF_HowTo]] to learn how to use it. | ||
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| + | * [http://www.mbl.edu/xenopus/files/2012/07/XenBioinfo2014_course_outline.pdf Workshop Outline & Rationale] | ||
| + | * [http://www.mbl.edu/xenopus/files/2012/07/XenBioinfo2014_Syllabus.feb24.pdf Syllabus] | ||
| + | |||
* [[List_of_sessions]] | * [[List_of_sessions]] | ||
* [[List_of_participants_2014]] | * [[List_of_participants_2014]] | ||
| − | * https://github.com/taejoon/XenBioinfo2014 (Our primary github repository. See [[ | + | * https://github.com/taejoon/XenBioinfo2014 (Our primary github repository. See [[Github_HowTo]] to learn how to use it.) |
= Resources = | = Resources = | ||
* [[List_of_programs]] - programs used during the workshop | * [[List_of_programs]] - programs used during the workshop | ||
| − | * [[ | + | * [[List_of_links]] |
| + | * [[Point_of_significance]] - Articles published in Nature Method. | ||
| + | * [[List_of_databases]] | ||
| + | * http://www.rain.org/~mkummel/unix.html (Unix Cheat Sheet) | ||
| + | * http://www.ee.surrey.ac.uk/Teaching/Unix/index.html (A truly excellent UNIX primer, we recommend going through it a few times.) | ||
| + | * http://software-carpentry.org/v5/book.html ('Software Carpentry' Book, edited by Greg Wilson. Don't worry, we will not cover all of them, although we are happy to discuss about it.) | ||
| + | * https://github.com/stephenturner/oneliners ('Useful bash one-liners for bioinformatics') | ||
| + | * https://github.com/marcottelab/HTseq-toolbox/ | ||
| + | * https://github.com/marcottelab/MSblender/ | ||
= Alumni = | = Alumni = | ||
| + | == Instructors == | ||
| + | * [http://kirschner.med.harvard.edu/files/html/people/Bob.shtml Bob Freeman], Harvard University | ||
| + | * [http://www.nimr.mrc.ac.uk/research/mike-gilchrist/ Mike Gilchrist], NIMR, UK | ||
| + | |||
| + | == Participants == | ||
* [[List_of_participants_2012]] | * [[List_of_participants_2012]] | ||
* [[List_of_participants_2013]] | * [[List_of_participants_2013]] | ||
Latest revision as of 10:43, 25 February 2015
Wellcome to Xenopus Bioinformatics Workshop 2014!
This wiki is for Xenopus Bioinformatics Workshop 2014 at the Marine Biological Laboratory (MBL) (May 11-18, 2014), hosted by National Xenopus Resrouce (NXR)
Instructors
- Leonid Peshkin, Harvard University
- Taejoon Kwon, Univerity of Texas at Austin
- Virginia Savova, Harvard University
- Ian Quigley, Salk Institute
- Martin Wühr, Harvard University (guest instructor)
Meals
- Breakfast: 7am - 8:30am
- Lunch: 12pm - 1:30pm
- Dinner: 5pm - 7pm
Course
Mainly we will use in-house workstation for most of sessions. Just in case, when you need high-performance computing (e.g. your own sequencing data), you can use guest account of the Orchestra clusters at Harvard Medical School. Check LSF_HowTo to learn how to use it.
- List_of_sessions
- List_of_participants_2014
- https://github.com/taejoon/XenBioinfo2014 (Our primary github repository. See Github_HowTo to learn how to use it.)
Resources
- List_of_programs - programs used during the workshop
- List_of_links
- Point_of_significance - Articles published in Nature Method.
- List_of_databases
- http://www.rain.org/~mkummel/unix.html (Unix Cheat Sheet)
- http://www.ee.surrey.ac.uk/Teaching/Unix/index.html (A truly excellent UNIX primer, we recommend going through it a few times.)
- http://software-carpentry.org/v5/book.html ('Software Carpentry' Book, edited by Greg Wilson. Don't worry, we will not cover all of them, although we are happy to discuss about it.)
- https://github.com/stephenturner/oneliners ('Useful bash one-liners for bioinformatics')
- https://github.com/marcottelab/HTseq-toolbox/
- https://github.com/marcottelab/MSblender/
Alumni
Instructors
- Bob Freeman, Harvard University
- Mike Gilchrist, NIMR, UK
