Difference between revisions of "List of sessions"
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== References == | == References == | ||
| − | * [http://dev.biologists.org/content/141/9/1927.long Mike Gilchrist's paper for 30-min time course RNA-seq] | + | * [http://dev.biologists.org/content/141/9/1927.long Mike Gilchrist's paper for 30-min time course RNA-seq in .X tropicalis] |
| + | * [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0077700 Mkie Blower's paper for different prep method of X. laevis egg transcripts] | ||
| + | * [http://elifesciences.org/content/3/e01439.short Rfx2 paper (RNA-seq + ChIP-seq)] | ||
= Day 4 - 5/14/2014 = | = Day 4 - 5/14/2014 = | ||
Revision as of 08:54, 13 May 2014
Servers:
- 10.120.5.246 (main Linux server)
- 10.120.6.244 (second Linux server)
- 10.120.4.248 (Mac server)
Contents
Day 2 - 5/12/2014
- Intro_to_Unix_and_Scripting (Leon) -- http://data.marcottelab.org/XenBioinfo2014/pdf/SummerDay_LP.pdf (Lecture Note)
- Intro_to_Programming_and_Python (Taejoon)
- Awk (Leon)
- Xenopus_genome (Taejoon)
Day 3 - 5/13/2014
- Morning - RNAseq_part1 (Ian)
- Afternoon 1 - RNAseq_part1 (Ian)
- Afternoon 2 - RNAseq_part2 (Virginia)
- Evening - Galaxy (Virginia)
References
- Mike Gilchrist's paper for 30-min time course RNA-seq in .X tropicalis
- Mkie Blower's paper for different prep method of X. laevis egg transcripts
- Rfx2 paper (RNA-seq + ChIP-seq)
Day 4 - 5/14/2014
- Morning 1/2 - Shotgun_Proteomics_Theory (Martin)
- Morning 2/2 - Shotgun_Proteomics_Data_Process (Taejoon)
- Afternoon I - Shotgun_Proteomics_Experiment_and_Analysis (Martin & Leon)
- Afternoon II - Proteomics_Differential_Expression_Analysis (Taejoon)
- Evening - Clustering_and_Classification (Leon)
Day 5 - 5/15/2014
- Machine_Learning_with_Weka (Leon)
- ChIPseq_prep_and_map (Ian)
- Vis_with_IGV (Ian)
Day 6 - 5/16/2014
- Motif_analysis (Ian)
- ChIPseq_peak_calling (Ian)
- BLAST_and_sequence_analysis (Taejoon)
Day 7 - 5/17/2014
- Gene_enrichment_analysis (Virginia)
- Network_analysis (Taejoon)
- RNAseq_assembly (Taejoon)
