Latest revision as of 11:06, 2 December 2014

JGI annotation for Xenopus laevis

From XenBase FTP

• Xenla6.0 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla6.0/)

XeXenL6RMv10+numeric_id+'m' (e.g. XeXenL6RMv10036376m)

• Xenla6.1 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla6.1/)

Xelaev12+numeric_id+',' (e.g. Xelaev12035491m)

• Xenla7.0 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla7.0/)

28+'numeric_id' (e.g. 28269548, 28325564)

• Xenla7.1 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla7.1/)

Xelaev15+numeric_id+'m' (e.g. Xelaev15034936m)

• Xenla7.2 (ftp://ftp.xenbase.org/pub/Genomics/JGI/Xenla7.2/)

Xelaev16+numeric_id'+'m' (e.g. Xelaev16039042m)

(N.B. Some of JGI sequences from daudin site have different IDs, i.e. JGIv10_10020581 or JGIv14_28756933. The number after underscore should be matched to its original ID.)

• JGIv10 (http://daudin.icmb.utexas.edu/xenopus-pub/annot/JGIv10/)

Xelaev10+numeric_id+'m' (e.g. Xelaev10020581m)

• JGIv14 (http://daudin.icmb.utexas.edu/xenopus-pub/annot/JGIv14/)

287+'numeric_id' (e.g. 28756933)

• JGIv15 (http://daudin.icmb.utexas.edu/xenopus-pub/annot/JGIv15/)

Same as Xenla7.1. Xelaev15+numeric_id+'m' (e.g. Xelaev15034936m)

• JGIv16 (http://daudin.icmb.utexas.edu/xenopus-pub/annot/JGIv16/)

Same as Xenla7.2.  Xelaev16+numeric_id'+'m' (e.g. Xelaev16039042m)